#NEXUS

BEGIN TREES;

Tree speceiesTree = ((((x,y),w),m),n);
Tree geneTree1 = ((((a::.5,b::.5)::.5,c::.5)::.5,d::.5)::.5,e::.5)::.5;
Tree geneTree2 = ((a::.5,b::.5)::.5,((c::.5,e::.5)::.5,d::.5)::.5)::.5;
Tree geneTree3 = ((a::.5,c::.5)::.5,((b::.5,e::.5)::.5,d::.5)::.5)::.5;

END;


BEGIN PHYLONET;

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -a <x:a; y:b; w:c; m:d; n:e>;

END;
===

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -a <x:a; y:b; w:c; m:d; n:e>
Species_Tree#1 = ((((x:0,y:0):1,w:0):2,m:0):4,n:0):0;
Total number of extra lineages: 7
===
